IL_9HA5_060

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9HA5|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA5_060 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1653

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9HA5|1|A|C|2636
9HA5|1|A|U|2637
9HA5|1|A|G|2638
9HA5|1|A|A|2639
9HA5|1|A|G|2640
*
9HA5|1|A|C|2774
9HA5|1|A|G|2775
9HA5|1|A|A|2776
9HA5|1|A|G|2777
9HA5|1|A|A|2778
9HA5|1|A|U|2779
9HA5|1|A|G|2780
9HA5|1|A|A|2781
9HA5|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

Large ribosomal subunit protein uL13