3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9HA6_006 not in the Motif Atlas
Homologous match to IL_7A0S_006
Geometric discrepancy: 0.1455
The information below is about IL_7A0S_006
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

9HA6|1|A|G|188
9HA6|1|A|G|189
9HA6|1|A|A|190
9HA6|1|A|A|191
9HA6|1|A|C|192
9HA6|1|A|U|193
9HA6|1|A|G|194
*
9HA6|1|A|C|201
9HA6|1|A|U|202
9HA6|1|A|A|203
9HA6|1|A|A|204
9HA6|1|A|G|205
9HA6|1|A|U|206
9HA6|1|A|A|207
9HA6|1|A|C|208

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

Chain 3
Large ribosomal subunit protein bL35
Chain L
Large ribosomal subunit protein uL15
Chain X
Large ribosomal subunit protein bL28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1105 s
Application loaded.