IL_9HA6_007

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1537

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9HA6|1|A|C|239
9HA6|1|A|C|240
9HA6|1|A|A|241
9HA6|1|A|G|242
9HA6|1|A|U|243
9HA6|1|A|A|244
9HA6|1|A|G|245
*
9HA6|1|A|C|253
9HA6|1|A|G|254
9HA6|1|A|A|255
9HA6|1|A|A|256
9HA6|1|A|C|257
9HA6|1|A|G|258

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain L

Large ribosomal subunit protein uL15