IL_9HA6_010

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_010 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.1863

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

9HA6|1|A|U|293
9HA6|1|A|A|294
9HA6|1|A|G|295
*
9HA6|1|A|C|343
9HA6|1|A|A|344
9HA6|1|A|A|345
9HA6|1|A|A|346
9HA6|1|A|A|347

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL24