IL_9HA6_016

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9HA6|1|A|G|801, 9HA6|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1724

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9HA6|1|A|G|674
9HA6|1|A|A|675
9HA6|1|A|A|676
9HA6|1|A|A|677
9HA6|1|A|C|678
*
9HA6|1|A|G|799
9HA6|1|A|A|800
9HA6|1|A|G|801
9HA6|1|A|A|802
9HA6|1|A|U|803
9HA6|1|A|A|804
9HA6|1|A|G|805
9HA6|1|A|C|806

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15