IL_9HA6_031

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

9HA6|1|A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_031 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.3976

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9HA6|1|A|G|879
9HA6|1|A|G|880
9HA6|1|A|G|881
*
9HA6|1|A|U|895
9HA6|1|A|A|896
9HA6|1|A|C|897
9HA6|1|A|C|898

Current chains

Chain A

23S ribosomal rRNA

Nearby chains