IL_9HA6_034

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

9HA6|1|A|A|1009

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_034 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1123

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

9HA6|1|A|U|1004
9HA6|1|A|C|1005
9HA6|1|A|C|1006
9HA6|1|A|C|1007
9HA6|1|A|A|1008
9HA6|1|A|A|1009
9HA6|1|A|A|1010
9HA6|1|A|G|1011
*
9HA6|1|A|C|1150
9HA6|1|A|A|1151

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain Q

Large ribosomal subunit protein bL20