3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
CUGCGAAG*UGGAG
Length
13 nucleotides
Bulged bases
9HA6|1|A|C|1211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9HA6_044 not in the Motif Atlas
Homologous match to IL_5J7L_288
Geometric discrepancy: 0.1472
The information below is about IL_5J7L_288
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

9HA6|1|A|C|1208
9HA6|1|A|U|1209
9HA6|1|A|G|1210
9HA6|1|A|C|1211
9HA6|1|A|G|1212
9HA6|1|A|A|1213
9HA6|1|A|A|1214
9HA6|1|A|G|1215
*
9HA6|1|A|U|1234
9HA6|1|A|G|1235
9HA6|1|A|G|1236
9HA6|1|A|A|1237
9HA6|1|A|G|1238

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

Chain Q
Large ribosomal subunit protein bL20

Coloring options:


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