IL_9HA6_052

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

9HA6|1|A|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_052 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2277

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9HA6|1|A|G|1432
9HA6|1|A|A|1433
9HA6|1|A|A|1434
9HA6|1|A|G|1435
*
9HA6|1|A|C|1557
9HA6|1|A|C|1558
9HA6|1|A|U|1559
9HA6|1|A|G|1560
9HA6|1|A|C|1561

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2