IL_9HA6_067

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_067 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.2024

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9HA6|1|A|U|1720
9HA6|1|A|G|1721
9HA6|1|A|A|1722
9HA6|1|A|G|1723
9HA6|1|A|G|1724
*
9HA6|1|A|U|1736
9HA6|1|A|G|1737
9HA6|1|A|G|1738
9HA6|1|A|A|1739
9HA6|1|A|G|1740

Current chains

Chain A

23S ribosomal rRNA

Nearby chains