IL_9HA6_073

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_073 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.204

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9HA6|1|A|U|1851
9HA6|1|A|U|1852
9HA6|1|A|A|1853
9HA6|1|A|A|1854
9HA6|1|A|U|1855
9HA6|1|A|U|1856
9HA6|1|A|G|1857
9HA6|1|A|A|1858
9HA6|1|A|U|1859
9HA6|1|A|G|1860
*
9HA6|1|A|U|1882
9HA6|1|A|U|1883
9HA6|1|A|G|1884
9HA6|1|A|A|1885
9HA6|1|A|U|1886
9HA6|1|A|C|1887
9HA6|1|A|G|1888
9HA6|1|A|A|1889
9HA6|1|A|A|1890
9HA6|1|A|G|1891

Current chains

Chain A

23S ribosomal rRNA

Nearby chains