IL_9HAL_007

3D structure

PDB id

9HAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit d126_(L29)-/(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.49 Å

Loop

Sequence

CCCAGUAG*CGAACGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAL_007 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.3141

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9HAL|1|A|C|238
9HAL|1|A|C|239
9HAL|1|A|C|240
9HAL|1|A|A|241
9HAL|1|A|G|242
9HAL|1|A|U|243
9HAL|1|A|A|244
9HAL|1|A|G|245
*
9HAL|1|A|C|253
9HAL|1|A|G|254
9HAL|1|A|A|255
9HAL|1|A|A|256
9HAL|1|A|C|257
9HAL|1|A|G|258
9HAL|1|A|G|259

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15