IL_9HAL_035

3D structure

PDB id

9HAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit d126_(L29)-/(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.49 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9HAL|1|A|G|2780

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAL_035 not in the Motif Atlas

Homologous match to IL_9DFE_101

Geometric discrepancy: 0.1849

The information below is about IL_9DFE_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9HAL|1|A|C|2636
9HAL|1|A|U|2637
9HAL|1|A|G|2638
9HAL|1|A|A|2639
9HAL|1|A|G|2640
*
9HAL|1|A|C|2774
9HAL|1|A|G|2775
9HAL|1|A|A|2776
9HAL|1|A|G|2777
9HAL|1|A|A|2778
9HAL|1|A|U|2779
9HAL|1|A|G|2780
9HAL|1|A|A|2781
9HAL|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

Large ribosomal subunit protein uL13