IL_9HAL_036

3D structure

PDB id

9HAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit d126_(L29)-/(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.49 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

9HAL|1|A|G|2668

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAL_036 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.4968

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9HAL|1|A|C|2651
9HAL|1|A|C|2652
9HAL|1|A|U|2653
9HAL|1|A|A|2654
9HAL|1|A|G|2655
9HAL|1|A|U|2656
9HAL|1|A|A|2657
9HAL|1|A|C|2658
*
9HAL|1|A|G|2663
9HAL|1|A|G|2664
9HAL|1|A|A|2665
9HAL|1|A|C|2666
9HAL|1|A|C|2667
9HAL|1|A|G|2668
9HAL|1|A|G|2669

Current chains

Chain A

23S ribosomal RNA

Nearby chains