IL_9HAM_006

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAM_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.2914

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9HAM|1|A|G|188
9HAM|1|A|G|189
9HAM|1|A|A|190
9HAM|1|A|A|191
9HAM|1|A|C|192
9HAM|1|A|U|193
9HAM|1|A|G|194
*
9HAM|1|A|C|201
9HAM|1|A|U|202
9HAM|1|A|A|203
9HAM|1|A|A|204
9HAM|1|A|G|205
9HAM|1|A|U|206
9HAM|1|A|A|207
9HAM|1|A|C|208

Current chains

Chain A

23S ribosomal RNA

Nearby chains