IL_9HAM_021

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

UC*GUUA

Length

6 nucleotides

Bulged bases

9HAM|1|A|U|931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAM_021 not in the Motif Atlas

Homologous match to IL_5J7L_268

Geometric discrepancy: 0.2863

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9HAM|1|A|U|847
9HAM|1|A|C|848
*
9HAM|1|A|G|930
9HAM|1|A|U|931
9HAM|1|A|U|932
9HAM|1|A|A|933

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein uL30