IL_9HAM_035

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAM_035 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.3159

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9HAM|1|A|C|1357
9HAM|1|A|G|1358
9HAM|1|A|A|1359
9HAM|1|A|G|1360
9HAM|1|A|G|1361
*
9HAM|1|A|C|1370
9HAM|1|A|G|1371
9HAM|1|A|U|1372
9HAM|1|A|A|1373
9HAM|1|A|G|1374

Current chains

Chain A

23S ribosomal RNA

Nearby chains