IL_9HAM_054

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9HAM|1|A|G|2780

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAM_054 not in the Motif Atlas

Homologous match to IL_9DFE_101

Geometric discrepancy: 0.1714

The information below is about IL_9DFE_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9HAM|1|A|C|2636
9HAM|1|A|U|2637
9HAM|1|A|G|2638
9HAM|1|A|A|2639
9HAM|1|A|G|2640
*
9HAM|1|A|C|2774
9HAM|1|A|G|2775
9HAM|1|A|A|2776
9HAM|1|A|G|2777
9HAM|1|A|A|2778
9HAM|1|A|U|2779
9HAM|1|A|G|2780
9HAM|1|A|A|2781
9HAM|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

Large ribosomal subunit protein uL13