IL_9HAM_059

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9HAM|1|A|A|2765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAM_059 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.2399

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9HAM|1|A|G|2737
9HAM|1|A|A|2738
9HAM|1|A|U|2739
9HAM|1|A|A|2740
9HAM|1|A|A|2741
9HAM|1|A|G|2742
*
9HAM|1|A|C|2762
9HAM|1|A|G|2763
9HAM|1|A|A|2764
9HAM|1|A|A|2765
9HAM|1|A|A|2766
9HAM|1|A|C|2767

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6

Chain J

Large ribosomal subunit protein uL13