IL_9HFO_002

3D structure

PDB id

9HFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUG*CUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HFO_002 not in the Motif Atlas

Geometric match to IL_8CRE_060

Geometric discrepancy: 0.1307

The information below is about IL_8CRE_060

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9HFO|1|5|G|49
9HFO|1|5|U|50
9HFO|1|5|U|51
9HFO|1|5|G|52
*
9HFO|1|5|C|62
9HFO|1|5|U|63
9HFO|1|5|U|64
9HFO|1|5|C|65

Current chains

Chain 5

fMet-tRNAMet

Nearby chains