IL_9HLZ_008

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAACUG*CUAAGUAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_008 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.091

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9HLZ|1|AA|U|228
9HLZ|1|AA|G|229
9HLZ|1|AA|A|230
9HLZ|1|AA|A|231
9HLZ|1|AA|C|232
9HLZ|1|AA|U|233
9HLZ|1|AA|G|234
*
9HLZ|1|AA|C|241
9HLZ|1|AA|U|242
9HLZ|1|AA|A|243
9HLZ|1|AA|A|244
9HLZ|1|AA|G|245
9HLZ|1|AA|U|246
9HLZ|1|AA|A|247
9HLZ|1|AA|A|248

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain JJ

Large ribosomal subunit protein uL15m

Chain SS

Large ribosomal subunit protein bL28m