IL_9HLZ_012

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_012 not in the Motif Atlas

Geometric match to IL_8GLP_213

Geometric discrepancy: 0.2975

The information below is about IL_8GLP_213

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9HLZ|1|AA|U|537
9HLZ|1|AA|A|538
9HLZ|1|AA|U|539
*
9HLZ|1|AA|A|546
9HLZ|1|AA|A|547
9HLZ|1|AA|A|548

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 11

Large ribosomal subunit protein mL38

Chain JJ

Large ribosomal subunit protein uL15m

Chain RR

Large ribosomal subunit protein bL27m

Chain ZZ

Large ribosomal subunit protein bL35m