IL_9HLZ_014

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAG*CAGAUAGC

Length

13 nucleotides

Bulged bases

9HLZ|1|AA|G|692, 9HLZ|1|AA|G|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_014 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1286

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

9HLZ|1|AA|G|583
9HLZ|1|AA|A|584
9HLZ|1|AA|A|585
9HLZ|1|AA|A|586
9HLZ|1|AA|G|587
*
9HLZ|1|AA|C|690
9HLZ|1|AA|A|691
9HLZ|1|AA|G|692
9HLZ|1|AA|A|693
9HLZ|1|AA|U|694
9HLZ|1|AA|A|695
9HLZ|1|AA|G|696
9HLZ|1|AA|C|697

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain DD

Large ribosomal subunit protein uL4m

Chain JJ

Large ribosomal subunit protein uL15m