IL_9HLZ_024

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAU*AAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_024 not in the Motif Atlas

Homologous match to IL_7A0S_029

Geometric discrepancy: 0.328

The information below is about IL_7A0S_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.1

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

9HLZ|1|AA|G|787
9HLZ|1|AA|C|788
9HLZ|1|AA|A|789
9HLZ|1|AA|A|790
9HLZ|1|AA|U|791
*
9HLZ|1|AA|A|835
9HLZ|1|AA|A|836
9HLZ|1|AA|U|837
9HLZ|1|AA|C|838

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain EE

Large ribosomal subunit protein uL5m

Chain KK

Large ribosomal subunit protein uL16m