IL_9HLZ_031

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAAGUG*CUUAAUAAUAAGAAU

Length

22 nucleotides

Bulged bases

9HLZ|1|AA|U|1108, 9HLZ|1|AA|A|1109, 9HLZ|1|AA|U|1114, 9HLZ|1|AA|A|1119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_031 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.3177

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9HLZ|1|AA|A|943
9HLZ|1|AA|U|944
9HLZ|1|AA|A|945
9HLZ|1|AA|A|946
9HLZ|1|AA|G|947
9HLZ|1|AA|U|948
9HLZ|1|AA|G|949
*
9HLZ|1|AA|C|1106
9HLZ|1|AA|U|1107
9HLZ|1|AA|U|1108
9HLZ|1|AA|A|1109
9HLZ|1|AA|A|1110
9HLZ|1|AA|U|1111
9HLZ|1|AA|A|1112
9HLZ|1|AA|A|1113
9HLZ|1|AA|U|1114
9HLZ|1|AA|A|1115
9HLZ|1|AA|A|1116
9HLZ|1|AA|G|1117
9HLZ|1|AA|A|1118
9HLZ|1|AA|A|1119
9HLZ|1|AA|U|1120

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 00

Large ribosomal subunit protein bL36m

Chain 44

Large ribosomal subunit protein mL43

Chain CC

Large ribosomal subunit protein uL3m

Chain FF

Large ribosomal subunit protein uL6m

Chain HH

Large ribosomal subunit protein uL13m

Chain aa

Large ribosomal subunit protein mL58

Chain cc

Large ribosomal subunit protein mL60