IL_9HLZ_054

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAGAA*UUAAGUAUA

Length

16 nucleotides

Bulged bases

9HLZ|1|AA|A|1708, 9HLZ|1|AA|A|1724, 9HLZ|1|AA|U|1728

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_054 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.2982

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9HLZ|1|AA|U|1705
9HLZ|1|AA|G|1706
9HLZ|1|AA|C|1707
9HLZ|1|AA|A|1708
9HLZ|1|AA|G|1709
9HLZ|1|AA|A|1710
9HLZ|1|AA|A|1711
*
9HLZ|1|AA|U|1721
9HLZ|1|AA|U|1722
9HLZ|1|AA|A|1723
9HLZ|1|AA|A|1724
9HLZ|1|AA|G|1725
9HLZ|1|AA|U|1726
9HLZ|1|AA|A|1727
9HLZ|1|AA|U|1728
9HLZ|1|AA|A|1729

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2m

Chain r

Small subunit ribosomal RNA; SSU rRNA