IL_9HLZ_062

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9HLZ|1|AA|C|1955, 9HLZ|1|AA|U|2880, 9HLZ|1|AA|A|2881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_062 not in the Motif Atlas

Geometric match to IL_8B0X_140

Geometric discrepancy: 0.1061

The information below is about IL_8B0X_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

9HLZ|1|AA|A|1954
9HLZ|1|AA|C|1955
9HLZ|1|AA|G|1956
*
9HLZ|1|AA|C|2879
9HLZ|1|AA|U|2880
9HLZ|1|AA|A|2881
9HLZ|1|AA|U|2882

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain OO

Large ribosomal subunit protein uL22m

Chain WW

Large ribosomal subunit protein bL32m