IL_9HLZ_065

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAA*UUGG

Length

7 nucleotides

Bulged bases

9HLZ|1|AA|G|2264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_065 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.2392

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9HLZ|1|AA|U|1981
9HLZ|1|AA|A|1982
9HLZ|1|AA|A|1983
*
9HLZ|1|AA|U|2262
9HLZ|1|AA|U|2263
9HLZ|1|AA|G|2264
9HLZ|1|AA|G|2265

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2m

Chain SS

Large ribosomal subunit protein bL28m