IL_9HLZ_066

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAG*CU

Length

6 nucleotides

Bulged bases

9HLZ|1|AA|U|1989, 9HLZ|1|AA|A|1990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_066 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1589

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9HLZ|1|AA|A|1988
9HLZ|1|AA|U|1989
9HLZ|1|AA|A|1990
9HLZ|1|AA|G|1991
*
9HLZ|1|AA|C|2256
9HLZ|1|AA|U|2257

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2m

Chain GG

Large ribosomal subunit protein bL9m

Chain SS

Large ribosomal subunit protein bL28m