IL_9HLZ_084

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAGUAC*GGACCA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_084 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1586

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9HLZ|1|AA|U|2919
9HLZ|1|AA|U|2920
9HLZ|1|AA|A|2921
9HLZ|1|AA|G|2922
9HLZ|1|AA|U|2923
9HLZ|1|AA|A|2924
9HLZ|1|AA|C|2925
*
9HLZ|1|AA|G|2930
9HLZ|1|AA|G|2931
9HLZ|1|AA|A|2932
9HLZ|1|AA|C|2933
9HLZ|1|AA|C|2934
9HLZ|1|AA|A|2935

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain FF

Large ribosomal subunit protein uL6m