IL_9HLZ_089

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUAAA*UGAAGU

Length

12 nucleotides

Bulged bases

9HLZ|1|AA|A|3102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_089 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1517

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9HLZ|1|AA|A|3073
9HLZ|1|AA|A|3074
9HLZ|1|AA|U|3075
9HLZ|1|AA|A|3076
9HLZ|1|AA|A|3077
9HLZ|1|AA|A|3078
*
9HLZ|1|AA|U|3099
9HLZ|1|AA|G|3100
9HLZ|1|AA|A|3101
9HLZ|1|AA|A|3102
9HLZ|1|AA|G|3103
9HLZ|1|AA|U|3104

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 00

Large ribosomal subunit protein bL36m

Chain FF

Large ribosomal subunit protein uL6m

Chain HH

Large ribosomal subunit protein uL13m