IL_9HLZ_117

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAAAG*CA

Length

9 nucleotides

Bulged bases

9HLZ|1|r|A|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_117 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1983

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9HLZ|1|r|U|678
9HLZ|1|r|U|679
9HLZ|1|r|U|680
9HLZ|1|r|A|681
9HLZ|1|r|A|682
9HLZ|1|r|A|683
9HLZ|1|r|G|684
*
9HLZ|1|r|C|945
9HLZ|1|r|A|946

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 1

Small ribosomal subunit protein mS38

Chain E

Small ribosomal subunit protein uS5m

Chain L

Small ribosomal subunit protein uS12m