IL_9HLZ_123

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUAG*UU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_123 not in the Motif Atlas

Homologous match to IL_6CZR_144

Geometric discrepancy: 0.2324

The information below is about IL_6CZR_144

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

9HLZ|1|r|A|839
9HLZ|1|r|G|840
9HLZ|1|r|U|841
9HLZ|1|r|A|842
9HLZ|1|r|G|843
*
9HLZ|1|r|U|869
9HLZ|1|r|U|870

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain BB

Large ribosomal subunit protein uL2m

Chain K

Small ribosomal subunit protein uS11m