IL_9HLZ_128

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UA*UAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_128 not in the Motif Atlas

Geometric match to IL_5ML7_009

Geometric discrepancy: 0.2037

The information below is about IL_5ML7_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

9HLZ|1|r|U|1018
9HLZ|1|r|A|1019
*
9HLZ|1|r|U|1258
9HLZ|1|r|A|1259
9HLZ|1|r|G|1260

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13m

Chain S

Small ribosomal subunit protein uS19m

Chain t

Transfer RNA; tRNA