IL_9HLZ_131

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UACA*UG

Length

6 nucleotides

Bulged bases

9HLZ|1|r|A|1100, 9HLZ|1|r|C|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_131 not in the Motif Atlas

Geometric match to IL_3MXH_004

Geometric discrepancy: 0.2196

The information below is about IL_3MXH_004

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

9HLZ|1|r|U|1099
9HLZ|1|r|A|1100
9HLZ|1|r|C|1101
9HLZ|1|r|A|1102
*
9HLZ|1|r|U|1237
9HLZ|1|r|G|1238

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3m

Chain J

Small ribosomal subunit protein uS10m

Chain N

Small ribosomal subunit protein uS14m

Chain X

Small ribosomal subunit protein mS33