IL_9HLZ_138

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_138 not in the Motif Atlas

Geometric match to IL_5T3K_002

Geometric discrepancy: 0.1553

The information below is about IL_5T3K_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

9HLZ|1|r|A|1347
9HLZ|1|r|U|1348
9HLZ|1|r|A|1349
*
9HLZ|1|r|U|1354
9HLZ|1|r|U|1355
9HLZ|1|r|U|1356

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain W

Small ribosomal subunit protein mS29