IL_9HLZ_142

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUC*GAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_142 not in the Motif Atlas

Homologous match to IL_6CZR_368

Geometric discrepancy: 0.1897

The information below is about IL_6CZR_368

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9HLZ|1|r|A|1469
9HLZ|1|r|C|1470
9HLZ|1|r|U|1471
9HLZ|1|r|C|1472
*
9HLZ|1|r|G|1589
9HLZ|1|r|A|1590
9HLZ|1|r|A|1591
9HLZ|1|r|A|1592
9HLZ|1|r|U|1593

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 1

Small ribosomal subunit protein mS38

Chain AA

Large subunit ribosomal RNA; LSU rRNA