IL_9HLZ_144

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_144 not in the Motif Atlas

Geometric match to IL_8OI5_066

Geometric discrepancy: 0.2645

The information below is about IL_8OI5_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

9HLZ|1|r|C|1475
9HLZ|1|r|A|1476
9HLZ|1|r|C|1477
*
9HLZ|1|r|G|1583
9HLZ|1|r|A|1584
9HLZ|1|r|A|1585
9HLZ|1|r|G|1586

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 1

Small ribosomal subunit protein mS38

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain L

Small ribosomal subunit protein uS12m