IL_9HLZ_148

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUA*UUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_148 not in the Motif Atlas

Geometric match to IL_4EYA_003

Geometric discrepancy: 0.206

The information below is about IL_4EYA_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9HLZ|1|r|U|1505
9HLZ|1|r|U|1506
9HLZ|1|r|U|1507
9HLZ|1|r|A|1508
*
9HLZ|1|r|U|1554
9HLZ|1|r|U|1555
9HLZ|1|r|U|1556
9HLZ|1|r|A|1557

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain MM

Large ribosomal subunit protein bL19m

Chain O

Small ribosomal subunit protein uS15m