IL_9HLZ_150

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUUU*AUUUA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_150 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.2098

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

9HLZ|1|r|U|1516
9HLZ|1|r|U|1517
9HLZ|1|r|U|1518
9HLZ|1|r|U|1519
9HLZ|1|r|U|1520
*
9HLZ|1|r|A|1543
9HLZ|1|r|U|1544
9HLZ|1|r|U|1545
9HLZ|1|r|U|1546
9HLZ|1|r|A|1547

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 5

Small ribosomal subunit protein mS44