IL_9HM0_008

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAACUG*CUAAGUAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_008 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.0952

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9HM0|1|AA|U|228
9HM0|1|AA|G|229
9HM0|1|AA|A|230
9HM0|1|AA|A|231
9HM0|1|AA|C|232
9HM0|1|AA|U|233
9HM0|1|AA|G|234
*
9HM0|1|AA|C|241
9HM0|1|AA|U|242
9HM0|1|AA|A|243
9HM0|1|AA|A|244
9HM0|1|AA|G|245
9HM0|1|AA|U|246
9HM0|1|AA|A|247
9HM0|1|AA|A|248

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain JJ

Large ribosomal subunit protein uL15m

Chain SS

Large ribosomal subunit protein bL28m

Chain YY

Large ribosomal subunit protein bL34m