IL_9HM0_012

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_012 not in the Motif Atlas

Geometric match to IL_9AXU_019

Geometric discrepancy: 0.2927

The information below is about IL_9AXU_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9HM0|1|AA|U|537
9HM0|1|AA|A|538
9HM0|1|AA|U|539
*
9HM0|1|AA|A|546
9HM0|1|AA|A|547
9HM0|1|AA|A|548

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 11

Large ribosomal subunit protein mL38

Chain JJ

Large ribosomal subunit protein uL15m

Chain RR

Large ribosomal subunit protein bL27m

Chain ZZ

Large ribosomal subunit protein bL35m