IL_9HM0_022
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGGUAC*GAAAUA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HM0_022 not in the Motif Atlas
- Geometric match to IL_8GLP_291
- Geometric discrepancy: 0.1986
- The information below is about IL_8GLP_291
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46203.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
9HM0|1|AA|U|780
9HM0|1|AA|G|781
9HM0|1|AA|G|782
9HM0|1|AA|U|783
9HM0|1|AA|A|784
9HM0|1|AA|C|785
*
9HM0|1|AA|G|841
9HM0|1|AA|A|842
9HM0|1|AA|A|843
9HM0|1|AA|A|844
9HM0|1|AA|U|845
9HM0|1|AA|A|846
Current chains
- Chain AA
- 21S mitochondrial rRNA
Nearby chains
- Chain EE
- Large ribosomal subunit protein uL5m
- Chain KK
- Large ribosomal subunit protein uL16m
- Chain RR
- Large ribosomal subunit protein bL27m
- Chain UU
- Large ribosomal subunit protein uL30m
- Chain cc
- Large ribosomal subunit protein mL60
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