IL_9HM0_029
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUAAGUG*CUUAAUAAUAAGAAU
- Length
- 22 nucleotides
- Bulged bases
- 9HM0|1|AA|U|1108, 9HM0|1|AA|A|1109, 9HM0|1|AA|A|1119
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HM0_029 not in the Motif Atlas
- Homologous match to IL_7A0S_036
- Geometric discrepancy: 0.3138
- The information below is about IL_7A0S_036
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
9HM0|1|AA|A|943
9HM0|1|AA|U|944
9HM0|1|AA|A|945
9HM0|1|AA|A|946
9HM0|1|AA|G|947
9HM0|1|AA|U|948
9HM0|1|AA|G|949
*
9HM0|1|AA|C|1106
9HM0|1|AA|U|1107
9HM0|1|AA|U|1108
9HM0|1|AA|A|1109
9HM0|1|AA|A|1110
9HM0|1|AA|U|1111
9HM0|1|AA|A|1112
9HM0|1|AA|A|1113
9HM0|1|AA|U|1114
9HM0|1|AA|A|1115
9HM0|1|AA|A|1116
9HM0|1|AA|G|1117
9HM0|1|AA|A|1118
9HM0|1|AA|A|1119
9HM0|1|AA|U|1120
Current chains
- Chain AA
- 21S mitochondrial rRNA
Nearby chains
- Chain 00
- Large ribosomal subunit protein bL36m
- Chain 44
- Large ribosomal subunit protein mL43
- Chain CC
- Large ribosomal subunit protein uL3m
- Chain FF
- Large ribosomal subunit protein uL6m
- Chain HH
- Large ribosomal subunit protein uL13m
- Chain cc
- Large ribosomal subunit protein mL60
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