IL_9HM0_033
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HM0_033 not in the Motif Atlas
- Homologous match to IL_7A0S_045
- Geometric discrepancy: 0.1319
- The information below is about IL_7A0S_045
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9HM0|1|AA|A|1295
9HM0|1|AA|U|1296
9HM0|1|AA|G|1297
9HM0|1|AA|A|1298
9HM0|1|AA|G|1299
9HM0|1|AA|U|1300
9HM0|1|AA|A|1301
9HM0|1|AA|A|1302
*
9HM0|1|AA|U|1911
9HM0|1|AA|G|1912
9HM0|1|AA|A|1913
9HM0|1|AA|A|1914
9HM0|1|AA|A|1915
9HM0|1|AA|U|1916
9HM0|1|AA|U|1917
Current chains
- Chain AA
- 21S mitochondrial rRNA
Nearby chains
- Chain 33
- Large ribosomal subunit protein mL41
- Chain DD
- Large ribosomal subunit protein uL4m
- Chain OO
- Large ribosomal subunit protein uL22m
- Chain WW
- Large ribosomal subunit protein bL32m
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