IL_9HM0_039

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_039 not in the Motif Atlas

Homologous match to IL_7A0S_052

Geometric discrepancy: 0.4642

The information below is about IL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38565.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

12

Unit IDs

9HM0|1|AA|U|1426
9HM0|1|AA|A|1427
9HM0|1|AA|U|1428
*
9HM0|1|AA|A|1525
9HM0|1|AA|A|1526
9HM0|1|AA|A|1527

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2m