IL_9HM0_042

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUAAU*AGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_042 not in the Motif Atlas

Homologous match to IL_7A0S_059

Geometric discrepancy: 0.2581

The information below is about IL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.5

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9HM0|1|AA|G|1603
9HM0|1|AA|A|1604
9HM0|1|AA|U|1605
9HM0|1|AA|A|1606
9HM0|1|AA|A|1607
9HM0|1|AA|U|1608
*
9HM0|1|AA|A|1904
9HM0|1|AA|G|1905
9HM0|1|AA|C|1906

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain LL

Large ribosomal subunit protein bL17m