IL_9HM0_045

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_045 not in the Motif Atlas

Geometric match to IL_8GLP_305

Geometric discrepancy: 0.0818

The information below is about IL_8GLP_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

9HM0|1|AA|G|1618
9HM0|1|AA|G|1619
9HM0|1|AA|A|1620
9HM0|1|AA|A|1621
9HM0|1|AA|C|1622
9HM0|1|AA|U|1623
9HM0|1|AA|C|1624
9HM0|1|AA|G|1625
9HM0|1|AA|G|1626
*
9HM0|1|AA|C|1890
9HM0|1|AA|U|1891
9HM0|1|AA|G|1892
9HM0|1|AA|U|1893
9HM0|1|AA|C|1894

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain II

Large ribosomal subunit protein uL14m