IL_9HM0_046

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

9HM0|1|AA|G|1892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_046 not in the Motif Atlas

Homologous match to IL_7A0S_062

Geometric discrepancy: 0.1181

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9HM0|1|AA|A|1621
9HM0|1|AA|C|1622
9HM0|1|AA|U|1623
9HM0|1|AA|C|1624
9HM0|1|AA|G|1625
9HM0|1|AA|G|1626
*
9HM0|1|AA|C|1890
9HM0|1|AA|U|1891
9HM0|1|AA|G|1892
9HM0|1|AA|U|1893

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain II

Large ribosomal subunit protein uL14m