IL_9HM0_050

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAGAA*UUAAGUAUA

Length

16 nucleotides

Bulged bases

9HM0|1|AA|A|1708, 9HM0|1|AA|A|1724, 9HM0|1|AA|U|1728

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_050 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.2909

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9HM0|1|AA|U|1705
9HM0|1|AA|G|1706
9HM0|1|AA|C|1707
9HM0|1|AA|A|1708
9HM0|1|AA|G|1709
9HM0|1|AA|A|1710
9HM0|1|AA|A|1711
*
9HM0|1|AA|U|1721
9HM0|1|AA|U|1722
9HM0|1|AA|A|1723
9HM0|1|AA|A|1724
9HM0|1|AA|G|1725
9HM0|1|AA|U|1726
9HM0|1|AA|A|1727
9HM0|1|AA|U|1728
9HM0|1|AA|A|1729

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2m

Chain r

Small subunit ribosomal RNA; SSU rRNA